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Medical Photonics / Semester information / Summer term 2019 / 2nd semester / Module F2.1 - Image Processing

Module F2.1 - Image Processing

Lecturers:

Prof. Dr. Christoph Biskup, Prof. Dr. Rainer Heintzmann,
Alexander Jügler, Alejandra Zegarra

Schedule:

  • Lectures: Monday 10.15 a.m. - 11.45 a.m. (Lecture hall Humangenetik),
    lectures start on Mon April 8th, 2019.
  • Exercise: Wednesday 8.15 a.m. - 9.45 a.m. (PC-Pool Chirurgie)
  • Please note: Additional time for answering (still remaining) questions will be offered. Date and time will be announced here.

Content:

Week   Monday
10.15 - 11.45		   Wednesday
8.15 - 9.45
 

Lecturer

 Lectures

Lecturer

 Exercises

1

Biskup

08.04.2019

  • Grayscale and color images
    • Color spaces (RGB, NTSC, CYMK)
    • colormaps
    • MATLAB functions for color images
  • Download:
  • Slides
  • Slides Heintzmann (new)

 

 

 		  

No seminar this week,
but some homework to be done...

Download:

to be submitted before April 16th 8.00 a.m.

Sample image files:

2

Biskup

15.04.2019

  • Grayscale and color images (Cont.)
  • Histograms
  • Intensity transformations

Download:

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

17.04.2019

  • Discussion of the exercises of week#1 (Solutions)

Download:

to be submitted before Mai 6th, 8.00 a.m.

3

 

 

22.04.2019

Holiday		  

24.04.2019

4

  Biskup

29.04.2019

  • Image acquisition
    • Detectors (PMT, CCD, CMOS),
    • Image degradation / noise

Download: Slides

  

01.05.2019

Holiday

5

Heintzmann

 

06.05.2019

  • Sampling
  • Image Preprocessing
    • Background subtraction
    • Flatfielding
    • Fourier-Filtering

Download: Slides

  

08.05.2019

Download:

  • Homework

to be submitted before May 14th 8.00 a.m.

 

6

 Heintzmann

13.05.2019

  • Image Preprocessing
    • Fourier-Filtering
    • Interpolation via FFT
    • Drift correction

Download: Slides

Links: Fourier-Transform

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

15.05.2019

Download:

  • Homework

to be submitted before May 21st, 8.00 a.m.

 7

Heintzmann

 

20.05.2019

  • Deconvolution
    • 1/OTF-Deconvolution
    • generalised Wiener filter, Wiener filter
    • Maximum likelihood deconvolution, iterative minimisation

Download: Slides

Links: Maximum Likelihood

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

22.05.2019

Download:

  • Homework

to be submitted before May 28th, 8.00 a.m.

 

8

  Heintzmann

27.05.2019

  • Maximum likelihood deconvolution, iterative minimisation, Richardson-Lucy minimisation, regularisers

Download: Slides

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

29.05.2019

9

  Biskup

03.06.2019

  • Segmentation
  • Edge detection
  • Morphology operations

Download: Slides

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

05.06.2019

10

  

10.06.2019

Holiday

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

  12.06.2019

11

Heintzmann

 

17.06.2019

  • Watershed segmentation
  • Labelling
  • Object measurement

Download: Slides

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

19.06.2019

 

12

Heintzmann

 

24.06.2019

  • Localization, localization imaging
  • Image registration
  • Morphing

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

26.06.2019

  • Image processing software (DipImg, ImageJ)

 

13

Heintzmann

 

01.07.2019

  • Tracking
  • GPU-Programming/CUDA

Download: Slides

Biskup,
Heintzmann,
Jügler

PC pool
"Alte Chirurgie"

03.07.2019

Questions & answers

Download:

 

14

Heintzmann
Biskup

PC pool
"Alte Chirurgie" 

08.07.2019

EXAM

Please, note: The exam starts at 9.00 a.m !!!